VASP and BUS error (7)

Questions regarding the compilation of VASP on various platforms: hardware, compilers and libraries, etc.


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Dr Vitaly V. G. Chaban
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VASP and BUS error (7)

#1 Post by Dr Vitaly V. G. Chaban » Thu Feb 17, 2011 1:24 am

We successfully compiled VASP_4.6.35 using intel 11.1 compilers and MKL on the Nehelum X5650 chipsets. It works correctly for serial jobs but trying parallel jobs gives the following error:

===========================================
running on 12 nodes
distr: one band on 1 nodes, 12 groups
vasp.4.6.35 3Apr08 complex
POSCAR found : 3 types and 363 ions

-----------------------------------------------------------------------------
| |
| ADVICE TO THIS USER RUNNING 'VASP/VAMP' (HEAR YOUR MASTER'S VOICE ...): |
| |
| One real space projector is optimized for |
| E = 449.69, eV but you are using a cutoff of |
| ENMAX= 400.00 eV ( QCUT= 5.42 a.u.) |
| This makes no sense reoptimize the projector |
| with the a.u. value given above |
| |
-----------------------------------------------------------------------------

LDA part: xc-table for Pade appr. of Perdew
POSCAR, INCAR and KPOINTS ok, starting setup
WARNING: wrap around errors must be expected
[exciton18:14714] *** Process received signal ***
[exciton18:14714] Signal: Bus error (7)
[exciton18:14714] Signal code: (2)
[exciton18:14714] Failing at address: 0x2b19a4df6c00
[exciton18:14715] *** Process received signal ***
[exciton18:14715] Signal: Bus error (7)
[exciton18:14715] Signal code: (2)
[exciton18:14715] Failing at address: 0x2afc65876000
[exciton18:14716] *** Process received signal ***
[exciton18:14716] Signal: Bus error (7)
[exciton18:14716] Signal code: (2)
[exciton18:14716] Failing at address: 0x2b8ba386a000
[exciton18:14717] *** Process received signal ***
[exciton18:14717] Signal: Bus error (7)
[exciton18:14717] Signal code: (2)
[exciton18:14717] Failing at address: 0x2b740f856c00
[exciton18:14718] *** Process received signal ***
[exciton18:14718] Signal: Bus error (7)
[exciton18:14718] Signal code: (2)
[exciton18:14718] Failing at address: 0x2aed10137c00
[exciton18:14719] *** Process received signal ***
[exciton18:14719] Signal: Bus error (7)
[exciton18:14719] Signal code: (2)
[exciton18:14719] Failing at address: 0x2b0041a30000
[exciton18:14720] *** Process received signal ***
[exciton18:14720] Signal: Bus error (7)
[exciton18:14720] Signal code: (2)
[exciton18:14720] Failing at address: 0x2af667396d00
[exciton18:14721] *** Process received signal ***
[exciton18:14721] Signal: Bus error (7)
[exciton18:14721] Signal code: (2)
[exciton18:14721] Failing at address: 0x2ad8e406ec80
[exciton18:14722] *** Process received signal ***
[exciton18:14722] Signal: Bus error (7)
[exciton18:14722] Signal code: (2)
[exciton18:14722] Failing at address: 0x2abe6db24d80
[exciton18:14723] *** Process received signal ***
[exciton18:14723] Signal: Bus error (7)
[exciton18:14723] Signal code: (2)
[exciton18:14723] Failing at address: 0x2ab499421d00
[exciton18:14724] *** Process received signal ***
[exciton18:14724] Signal: Bus error (7)
[exciton18:14724] Signal code: (2)
[exciton18:14724] Failing at address: 0x2ae2a7df5000
[exciton18:14725] *** Process received signal ***
[exciton18:14725] Signal: Bus error (7)
[exciton18:14725] Signal code: (2)
[exciton18:14725] Failing at address: 0x2b195ab80000
[exciton18:14716] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14716] [ 1] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(__intel_new_memcpy+0x15ab) [0x74c90b]
[exciton18:14716] *** End of error message ***
[exciton18:14715] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14715] [ 1] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(__intel_new_memcpy+0x15ab) [0x74c90b]
[exciton18:14715] *** End of error message ***
[exciton18:14719] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14719] [ 1] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(__intel_new_memcpy+0x15ab) [0x74c90b]
[exciton18:14719] *** End of error message ***
[exciton18:14724] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14724] [ 1] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(__intel_new_memcpy+0x15ab) [0x74c90b]
[exciton18:14724] *** End of error message ***
[exciton18:14725] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14725] [ 1] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(__intel_new_memcpy+0x15ab) [0x74c90b]
[exciton18:14725] *** End of error message ***
[exciton18:14718] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14718] [ 1] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2aed0da28db8]
[exciton18:14718] [ 2] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(ompi_free_list_grow+0x1cc) [0x2aed098bfdec]
[exciton18:14718] [ 3] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2aed0da26f53]
[exciton18:14718] [ 4] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2aed0c99da5a]
[exciton18:14718] [ 5] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2aed0c9957f8]
[exciton18:14718] [ 6] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2aed0da2824c]
[exciton18:14718] [ 7] /usr/local/openmpi/1.3.3-intel11.1/lib/libopen-pal.so.0(opal_progress+0x87) [0x2aed09de9db7]
[exciton18:14718] [ 8] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0 [0x2aed098da316]
[exciton18:14718] [ 9] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2aed0eae28f2]
[exciton18:14718] [10] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2aed0eadc7d6]
[exciton18:14718] [11] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(PMPI_Alltoallv+0x5f) [0x2aed098f1f1f]
[exciton18:14718] [12] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi_f77.so.0(pmpi_alltoallv__+0x101) [0x2aed09691941]
[exciton18:14718] [13] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(m_alltoall_i_+0x38) [0x45bc08]
[exciton18:14718] [14] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(mapset_+0x407f) [0x66951f]
[exciton18:14718] [15] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(MAIN__+0x13b00) [0x42a390]
[exciton18:14718] [16] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(main+0x3c) [0x41687c]
[exciton18:14718] [17] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3da761d994]
[exciton18:14718] [18] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp [0x416789]
[exciton18:14718] *** End of error message ***
[exciton18:14721] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14721] [ 1] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2ad8e156bdb8]
[exciton18:14721] [ 2] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(ompi_free_list_grow+0x1cc) [0x2ad8dd402dec]
[exciton18:14721] [ 3] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2ad8e1569f53]
[exciton18:14721] [ 4] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2ad8e04e0a5a]
[exciton18:14721] [ 5] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2ad8e04d87f8]
[exciton18:14721] [ 6] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2ad8e156b24c]
[exciton18:14721] [ 7] /usr/local/openmpi/1.3.3-intel11.1/lib/libopen-pal.so.0(opal_progress+0x87) [0x2ad8dd92cdb7]
[exciton18:14721] [ 8] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0 [0x2ad8dd41d316]
[exciton18:14721] [ 9] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2ad8e26258f2]
[exciton18:14721] [10] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2ad8e261f7d6]
[exciton18:14721] [11] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(PMPI_Alltoallv+0x5f) [0x2ad8dd434f1f]
[exciton18:14721] [12] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi_f77.so.0(pmpi_alltoallv__+0x101) [0x2ad8dd1d4941]
[exciton18:14721] [13] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(m_alltoall_i_+0x38) [0x45bc08]
[exciton18:14721] [14] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(mapset_+0x407f) [0x66951f]
[exciton18:14721] [15] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(MAIN__+0x13b00) [0x42a390]
[exciton18:14721] [16] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(main+0x3c) [0x41687c]
[exciton18:14721] [17] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3da761d994]
[exciton18:14721] [18] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp [0x416789]
[exciton18:14721] *** End of error message ***
[exciton18:14722] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14722] [ 1] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2abe6bbdddb8]
[exciton18:14722] [ 2] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(ompi_free_list_grow+0x1cc) [0x2abe67a74dec]
[exciton18:14722] [ 3] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2abe6bbdbf53]
[exciton18:14722] [ 4] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2abe6ab52a5a]
[exciton18:14722] [ 5] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2abe6ab4a7f8]
[exciton18:14722] [ 6] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2abe6bbdd24c]
[exciton18:14722] [ 7] /usr/local/openmpi/1.3.3-intel11.1/lib/libopen-pal.so.0(opal_progress+0x87) [0x2abe67f9edb7]
[exciton18:14722] [ 8] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0 [0x2abe67a8f316]
[exciton18:14722] [ 9] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2abe6cc978f2]
[exciton18:14722] [10] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2abe6cc917d6]
[exciton18:14722] [11] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(PMPI_Alltoallv+0x5f) [0x2abe67aa6f1f]
[exciton18:14722] [12] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi_f77.so.0(pmpi_alltoallv__+0x101) [0x2abe67846941]
[exciton18:14722] [13] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(m_alltoall_i_+0x38) [0x45bc08]
[exciton18:14722] [14] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(mapset_+0x407f) [0x66951f]
[exciton18:14722] [15] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(MAIN__+0x13b00) [0x42a390]
[exciton18:14722] [16] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(main+0x3c) [0x41687c]
[exciton18:14722] [17] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3da761d994]
[exciton18:14722] [18] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp [0x416789]
[exciton18:14722] *** End of error message ***
[exciton18:14720] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14720] [ 1] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2af66506bdb8]
[exciton18:14720] [ 2] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(ompi_free_list_grow+0x1cc) [0x2af660f02dec]
[exciton18:14720] [ 3] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2af665069f53]
[exciton18:14720] [ 4] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2af663fe0a5a]
[exciton18:14720] [ 5] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2af663fd87f8]
[exciton18:14720] [ 6] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2af66506b24c]
[exciton18:14720] [ 7] /usr/local/openmpi/1.3.3-intel11.1/lib/libopen-pal.so.0(opal_progress+0x87) [0x2af66142cdb7]
[exciton18:14720] [ 8] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0 [0x2af660f1d316]
[exciton18:14720] [ 9] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2af6661258f2]
[exciton18:14720] [10] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2af66611f7d6]
[exciton18:14720] [11] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(PMPI_Alltoallv+0x5f) [0x2af660f34f1f]
[exciton18:14720] [12] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi_f77.so.0(pmpi_alltoallv__+0x101) [0x2af660cd4941]
[exciton18:14720] [13] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(m_alltoall_i_+0x38) [0x45bc08]
[exciton18:14720] [14] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(mapset_+0x407f) [0x66951f]
[exciton18:14720] [15] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(MAIN__+0x13b00) [0x42a390]
[exciton18:14720] [16] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(main+0x3c) [0x41687c]
[exciton18:14720] [17] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3da761d994]
[exciton18:14720] [18] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp [0x416789]
[exciton18:14720] *** End of error message ***
[exciton18:14714] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14714] [ 1] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2b19a28e1db8]
[exciton18:14714] [ 2] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(ompi_free_list_grow+0x1cc) [0x2b199e778dec]
[exciton18:14714] [ 3] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2b19a28dff53]
[exciton18:14714] [ 4] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2b19a1856a5a]
[exciton18:14714] [ 5] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2b19a184e7f8]
[exciton18:14714] [ 6] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2b19a28e124c]
[exciton18:14714] [ 7] /usr/local/openmpi/1.3.3-intel11.1/lib/libopen-pal.so.0(opal_progress+0x87) [0x2b199eca2db7]
[exciton18:14714] [ 8] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0 [0x2b199e793316]
[exciton18:14714] [ 9] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2b19a399b8f2]
[exciton18:14714] [10] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2b19a39957d6]
[exciton18:14714] [11] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(PMPI_Alltoallv+0x5f) [0x2b199e7aaf1f]
[exciton18:14714] [12] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi_f77.so.0(pmpi_alltoallv__+0x101) [0x2b199e54a941]
[exciton18:14714] [13] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(m_alltoall_i_+0x38) [0x45bc08]
[exciton18:14717] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14717] [ 1] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2b740cf4ddb8]
[exciton18:14717] [ 2] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(ompi_free_list_grow+0x1cc) [0x2b7408de4dec]
[exciton18:14717] [ 3] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2b740cf4bf53]
[exciton18:14717] [ 4] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2b740bec2a5a]
[exciton18:14717] [ 5] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2b740beba7f8]
[exciton18:14717] [ 6] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2b740cf4d24c]
[exciton18:14717] [ 7] /usr/local/openmpi/1.3.3-intel11.1/lib/libopen-pal.so.0(opal_progress+0x87) [0x2b740930edb7]
[exciton18:14717] [ 8] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0 [0x2b7408dff316]
[exciton18:14717] [ 9] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2b740e0078f2]
[exciton18:14717] [10] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2b740e0017d6]
[exciton18:14723] [ 0] /lib64/libpthread.so.0 [0x3da820eb10]
[exciton18:14723] [ 1] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2ab4972e8db8]
[exciton18:14723] [ 2] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(ompi_free_list_grow+0x1cc) [0x2ab49317fdec]
[exciton18:14723] [ 3] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2ab4972e6f53]
[exciton18:14723] [ 4] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2ab49625da5a]
[exciton18:14723] [ 5] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_pml_ob1.so [0x2ab4962557f8]
[exciton18:14723] [ 6] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_btl_sm.so [0x2ab4972e824c]
[exciton18:14723] [ 7] /usr/local/openmpi/1.3.3-intel11.1/lib/libopen-pal.so.0(opal_progress+0x87) [0x2ab4936a9db7]
[exciton18:14723] [ 8] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0 [0x2ab49319a316]
[exciton18:14723] [ 9] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2ab4983a28f2]
[exciton18:14723] [10] /usr/local/openmpi/1.3.3-intel11.1/lib/openmpi/mca_coll_tuned.so [0x2ab49839c7d6]
[exciton18:14723] [11] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(PMPI_Alltoallv+0x5f) [0x2ab4931b1f1f]
[exciton18:14723] [12] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi_f77.so.0(pmpi_alltoallv__+0x101) [0x2ab492f51941]
[exciton18:14723] [13] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(m_alltoall_i_+0x38) [0x45bc08]
[exciton18:14723] [14] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(mapset_+0x407f) [0x66951f]
[exciton18:14723] [15] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(MAIN__+0x13b00) [0x42a390]
[exciton18:14723] [16] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(main+0x3c) [0x41687c]
[exciton18:14723] [17] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3da761d994]
[exciton18:14723] [18] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp [0x416789]
[exciton18:14723] *** End of error message ***
[exciton18:14714] [14] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(mapset_+0x407f) [0x66951f]
[exciton18:14714] [15] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(MAIN__+0x13b00) [0x42a390]
[exciton18:14714] [16] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(main+0x3c) [0x41687c]
[exciton18:14714] [17] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3da761d994]
[exciton18:14714] [18] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp [0x416789]
[exciton18:14714] *** End of error message ***
[exciton18:14717] [11] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi.so.0(PMPI_Alltoallv+0x5f) [0x2b7408e16f1f]
[exciton18:14717] [12] /usr/local/openmpi/1.3.3-intel11.1/lib/libmpi_f77.so.0(pmpi_alltoallv__+0x101) [0x2b7408bb6941]
[exciton18:14717] [13] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(m_alltoall_i_+0x38) [0x45bc08]
[exciton18:14717] [14] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(mapset_+0x407f) [0x66951f]
[exciton18:14717] [15] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(MAIN__+0x13b00) [0x42a390]
[exciton18:14717] [16] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp(main+0x3c) [0x41687c]
[exciton18:14717] [17] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3da761d994]
[exciton18:14717] [18] /usr/local/group/oprezhdo_group/VASP_4-6-35/vasp.4.6/vasp [0x416789]
[exciton18:14717] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 4 with PID 14718 on node exciton18 exited on signal 7 (Bus error).

===========================================


Did anybody experience anything like that?
<span class='smallblacktext'>[ Edited ]</span>
Last edited by Dr Vitaly V. G. Chaban on Thu Feb 17, 2011 1:24 am, edited 1 time in total.

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VASP and BUS error (7)

#2 Post by admin » Wed Feb 23, 2011 7:52 am

these errors rather indicate that there are hardware communication problems
however, please also check whether openmpi is installed correctly and /usr/local/openmpi/1.3.3-intel11.1/lib/ is included in the $LD_LIBRARY_PATH (in the shell from which your job is started)
Last edited by admin on Wed Feb 23, 2011 7:52 am, edited 1 time in total.

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