VASP ceases output
Posted: Thu Dec 17, 2009 8:08 pm
Hello,
We have been working with Cs impurities in beta-SiC bulk and grain boundaries doing relaxations and nudged-elastic-band calculations. Our systems are usually between 64 and 257 atoms. We consistently run into a problem in which VASP ceases output, meaning it was outputting information every self-consistent iteration but then stopped outputting. It doesn't crash or swap or even output an error message. The processes on each processor are near 100% and the ram used is well within the amount that each node has. VASP is behaving as if it hit an infinite loop or the convergence time jumped several orders of magnitude and we're just too impatient to wait the indeterminate time it seems to take for the next self-consistent iteration. We have tried the tricks mentioned in the VASP manual and the workshop slides on the self-consistent loop. Sometimes these get us to finish a few ionic position updates, but ultimately the code will cease output before relaxation has hit the prescribed tolerance (sometimes well before)
We see this behavior for charged defects in bulk, neutral defects in grain boundaries, relaxations, and NEB.
An example that displays such behavior using PAW PBE pseudopotentials follows. The simulation is a relaxation of Cs on C with 3 Si vacancies and a charge of -1:
INCAR:
ISPIN = 2 #does spin-polarized calc.
MAGMOM= 1*1 29*1 31*1 #initial mag. mom. of each atom.
PREC = Accurate
IBRION= 2
NSW= 191
ISIF= 2
ENMAX= 600
ISMEAR = 0
SIGMA = 0.05
LREAL = FALSE
LWAVE = FALSE
LCHARG = FALSE
NELECT = 250
POSCAR:
CsSiC
1.00000000000000
8.7494304486000001 0.0000000000000000 0.0000000000000000
0.0000000000000000 8.7494304486000001 0.0000000000000000
0.0000000000000000 0.0000000000000000 8.7494304486000001
1 29 31
Direct
0.1521746385993157 0.0978253614006843 0.0978253614006843
0.0020940736428077 -0.0002312406812052 0.5017767840259878
0.0020940736428077 0.5017767840259878 -0.0002312406812052
-0.0011402637583988 0.5046498423015200 0.5046498423015200
0.5019153368849737 -0.0006233889514153 -0.0006233889514153
0.4981746882626552 -0.0003041590170997 0.4982575655168846
0.4981746882626552 0.4982575655168846 -0.0003041590170997
0.4988299926888340 0.5003706519503183 0.5003706519503183
0.2502312406812052 0.2479059263571923 0.5017767840259878
0.2506233889514154 0.7480846631150265 -0.0006233889514153
0.2503041590170997 0.7518253117373452 0.4982575655168846
0.7482232159740122 0.2479059263571923 -0.0002312406812052
0.7453501576984800 0.2511402637583987 0.5046498423015200
0.7517424344831151 0.7518253117373452 -0.0003041590170997
0.7496293480496818 0.7511700073111659 0.5003706519503183
0.2506233889514154 -0.0006233889514153 0.7480846631150265
0.2502312406812052 0.5017767840259878 0.2479059263571923
0.2503041590170997 0.4982575655168846 0.7518253117373452
0.7482232159740122 -0.0002312406812052 0.2479059263571923
0.7517424344831151 -0.0003041590170997 0.7518253117373452
0.7453501576984800 0.5046498423015200 0.2511402637583987
0.7496293480496818 0.5003706519503183 0.7511700073111659
-0.0331596298382924 0.2831596298382925 0.2831596298382925
0.0014171563186475 0.2485828436813525 0.7520596290206317
0.0014171563186475 0.7520596290206317 0.2485828436813525
-0.0002544922371168 0.7510793166397701 0.7510793166397701
0.4979403709793681 0.2485828436813525 0.2485828436813525
0.4989206833602297 0.2502544922371168 0.7510793166397701
0.4989206833602297 0.7510793166397701 0.2502544922371168
0.5003186595982599 0.7496813404017401 0.7496813404017401
0.1246530292679422 0.1253469707320579 0.6255831287752464
0.1246530292679422 0.6255831287752464 0.1253469707320579
0.1259851338891843 0.6248691900004983 0.6248691900004983
0.6244168712247536 0.1253469707320579 0.1253469707320579
0.6251308099995017 0.1240148661108157 0.6248691900004983
0.6251308099995017 0.6248691900004983 0.1240148661108157
0.6253609721039579 0.6246390278960421 0.6246390278960421
0.3851637523370613 0.3864345506814155 0.1356492351025685
0.3750076784645592 0.3758152392647054 0.6256567186233023
0.3883601525140254 0.8616398474859746 0.1121899960740070
0.3772654829523941 0.8727345170476060 0.6224612790399591
0.8729136292245181 0.3770863707754817 0.1243079535478512
0.8736856347775210 0.3763143652224791 0.6240983060827840
0.8635654493185844 0.8648362476629388 0.1356492351025685
0.8741847607352948 0.8749923215354408 0.6256567186233023
0.3851637523370613 0.1356492351025685 0.3864345506814155
0.3883601525140254 0.1121899960740070 0.8616398474859746
0.3750076784645592 0.6256567186233023 0.3758152392647054
0.3772654829523941 0.6224612790399591 0.8727345170476060
0.8729136292245181 0.1243079535478512 0.3770863707754817
0.8635654493185844 0.1356492351025685 0.8648362476629388
0.8736856347775210 0.6240983060827840 0.3763143652224791
0.8741847607352948 0.6256567186233023 0.8749923215354408
0.1256920464521488 0.3770863707754817 0.3770863707754817
0.1143507648974316 0.3864345506814155 0.8648362476629388
0.1143507648974316 0.8648362476629388 0.3864345506814155
0.1378100039259931 0.8616398474859746 0.8616398474859746
0.6259016939172160 0.3763143652224791 0.3763143652224791
0.6243432813766977 0.3758152392647054 0.8749923215354408
0.6243432813766977 0.8749923215354408 0.3758152392647054
0.6275387209600409 0.8727345170476060 0.8727345170476060
Thank you in advance for your help.
We have been working with Cs impurities in beta-SiC bulk and grain boundaries doing relaxations and nudged-elastic-band calculations. Our systems are usually between 64 and 257 atoms. We consistently run into a problem in which VASP ceases output, meaning it was outputting information every self-consistent iteration but then stopped outputting. It doesn't crash or swap or even output an error message. The processes on each processor are near 100% and the ram used is well within the amount that each node has. VASP is behaving as if it hit an infinite loop or the convergence time jumped several orders of magnitude and we're just too impatient to wait the indeterminate time it seems to take for the next self-consistent iteration. We have tried the tricks mentioned in the VASP manual and the workshop slides on the self-consistent loop. Sometimes these get us to finish a few ionic position updates, but ultimately the code will cease output before relaxation has hit the prescribed tolerance (sometimes well before)
We see this behavior for charged defects in bulk, neutral defects in grain boundaries, relaxations, and NEB.
An example that displays such behavior using PAW PBE pseudopotentials follows. The simulation is a relaxation of Cs on C with 3 Si vacancies and a charge of -1:
INCAR:
ISPIN = 2 #does spin-polarized calc.
MAGMOM= 1*1 29*1 31*1 #initial mag. mom. of each atom.
PREC = Accurate
IBRION= 2
NSW= 191
ISIF= 2
ENMAX= 600
ISMEAR = 0
SIGMA = 0.05
LREAL = FALSE
LWAVE = FALSE
LCHARG = FALSE
NELECT = 250
POSCAR:
CsSiC
1.00000000000000
8.7494304486000001 0.0000000000000000 0.0000000000000000
0.0000000000000000 8.7494304486000001 0.0000000000000000
0.0000000000000000 0.0000000000000000 8.7494304486000001
1 29 31
Direct
0.1521746385993157 0.0978253614006843 0.0978253614006843
0.0020940736428077 -0.0002312406812052 0.5017767840259878
0.0020940736428077 0.5017767840259878 -0.0002312406812052
-0.0011402637583988 0.5046498423015200 0.5046498423015200
0.5019153368849737 -0.0006233889514153 -0.0006233889514153
0.4981746882626552 -0.0003041590170997 0.4982575655168846
0.4981746882626552 0.4982575655168846 -0.0003041590170997
0.4988299926888340 0.5003706519503183 0.5003706519503183
0.2502312406812052 0.2479059263571923 0.5017767840259878
0.2506233889514154 0.7480846631150265 -0.0006233889514153
0.2503041590170997 0.7518253117373452 0.4982575655168846
0.7482232159740122 0.2479059263571923 -0.0002312406812052
0.7453501576984800 0.2511402637583987 0.5046498423015200
0.7517424344831151 0.7518253117373452 -0.0003041590170997
0.7496293480496818 0.7511700073111659 0.5003706519503183
0.2506233889514154 -0.0006233889514153 0.7480846631150265
0.2502312406812052 0.5017767840259878 0.2479059263571923
0.2503041590170997 0.4982575655168846 0.7518253117373452
0.7482232159740122 -0.0002312406812052 0.2479059263571923
0.7517424344831151 -0.0003041590170997 0.7518253117373452
0.7453501576984800 0.5046498423015200 0.2511402637583987
0.7496293480496818 0.5003706519503183 0.7511700073111659
-0.0331596298382924 0.2831596298382925 0.2831596298382925
0.0014171563186475 0.2485828436813525 0.7520596290206317
0.0014171563186475 0.7520596290206317 0.2485828436813525
-0.0002544922371168 0.7510793166397701 0.7510793166397701
0.4979403709793681 0.2485828436813525 0.2485828436813525
0.4989206833602297 0.2502544922371168 0.7510793166397701
0.4989206833602297 0.7510793166397701 0.2502544922371168
0.5003186595982599 0.7496813404017401 0.7496813404017401
0.1246530292679422 0.1253469707320579 0.6255831287752464
0.1246530292679422 0.6255831287752464 0.1253469707320579
0.1259851338891843 0.6248691900004983 0.6248691900004983
0.6244168712247536 0.1253469707320579 0.1253469707320579
0.6251308099995017 0.1240148661108157 0.6248691900004983
0.6251308099995017 0.6248691900004983 0.1240148661108157
0.6253609721039579 0.6246390278960421 0.6246390278960421
0.3851637523370613 0.3864345506814155 0.1356492351025685
0.3750076784645592 0.3758152392647054 0.6256567186233023
0.3883601525140254 0.8616398474859746 0.1121899960740070
0.3772654829523941 0.8727345170476060 0.6224612790399591
0.8729136292245181 0.3770863707754817 0.1243079535478512
0.8736856347775210 0.3763143652224791 0.6240983060827840
0.8635654493185844 0.8648362476629388 0.1356492351025685
0.8741847607352948 0.8749923215354408 0.6256567186233023
0.3851637523370613 0.1356492351025685 0.3864345506814155
0.3883601525140254 0.1121899960740070 0.8616398474859746
0.3750076784645592 0.6256567186233023 0.3758152392647054
0.3772654829523941 0.6224612790399591 0.8727345170476060
0.8729136292245181 0.1243079535478512 0.3770863707754817
0.8635654493185844 0.1356492351025685 0.8648362476629388
0.8736856347775210 0.6240983060827840 0.3763143652224791
0.8741847607352948 0.6256567186233023 0.8749923215354408
0.1256920464521488 0.3770863707754817 0.3770863707754817
0.1143507648974316 0.3864345506814155 0.8648362476629388
0.1143507648974316 0.8648362476629388 0.3864345506814155
0.1378100039259931 0.8616398474859746 0.8616398474859746
0.6259016939172160 0.3763143652224791 0.3763143652224791
0.6243432813766977 0.3758152392647054 0.8749923215354408
0.6243432813766977 0.8749923215354408 0.3758152392647054
0.6275387209600409 0.8727345170476060 0.8727345170476060
Thank you in advance for your help.