HDF5 linking problems

[paulfons]

I have successfully link and tested vasp 6.5.0 without an additional libraries. I downloaded hdf5-1.14.3 compiled it (using the same intel oneapi compilers as I used for the vasp compilation). The installation passed the internal HDF tests. I installed the HDF binaries to a local directory and attempted to link to it and encountered the following error. Might you have an idea what the problem is?

lhdf5_fortran -L/data/Software/wannier90/lib -lwannier
ld: /data/Software/HDF/hdf5-1.14.3/hdf5/lib/libhdf5_fortran.so: undefined reference to `H5Pget_actual_selection_io_mode'

The relevant lines in the makefile.include are

# HDF5-support (optional but strongly recommended, and mandatory for some features)
CPP_OPTIONS+= -DVASP_HDF5
HDF5_ROOT ?= /data/Software/HDF/hdf5-1.14.3/hdf5
LLIBS += -L$(HDF5_ROOT)/lib -lhdf5_fortran
INCS += -I$(HDF5_ROOT)/include

[manuel_engel1]

Hello again

The section in the makefile.include looks correct. However, I'm a bit confused from the error message you show. This seems to relate to wannier90. Could you please attach a complete output/error log?

[paulfons]

Hi Manuel,
I am afraid I clipped the output slightly. The top line was the last line of the link command and included wannier90 which apparently linked without problem.
I have attached the output from make (nohup.out) and the makefile.include for reference. As you can see from the makefile, I am attempting to link hdf5-1.14.3 to Vasp. The standalone tests for hdf5 in the hdf5-1.14.3 folder completed without error and the binaries/includes are in the directory: /data/Software/HDF/hdf5-1.14.3/hdf5.
Thanks for your help. Vasp works fine without hdf5 support, but it would be nice to have it as hdf5 support appears to becoming more important.

ls -l /data/Software/HDF/hdf5-1.14.3/hdf5/
total 12
drwxr-xr-x 2 paulfons matstud 4096 Feb 19 17:31 bin
drwxr-xr-x 2 paulfons matstud 4096 Feb 19 17:31 include
drwxr-xr-x 2 paulfons matstud 4096 Feb 19 17:32 lib
drwxr-xr-x 3 paulfons matstud 35 Feb 16 2024 share

[paulfons]

Please find attached the makefile.include and the log (nohup.out) for attempting to link with hdf5-1.14.3.