K-edge XAS of Mo

Queries about input and output files, running specific calculations, etc.


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sahar_bayat
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K-edge XAS of Mo

#1 Post by sahar_bayat » Fri Feb 23, 2024 4:53 pm

Hi all,
I am working on simulating XAS by DFT in VASP for a group of MoxSy-based chalcogels, including MoS2, MoS4 and Mo3S13. Based on experimental data I should see XAS peak at around just above 20000 eV for K-edge of Mo; however when the SCH calculation is done, I just get the zero values for IMAGINARY part of the dielectric function in the OUTCAR file. I believe the code works fine, because when I caluclate the L-edges for Mo, I can see the absorption values for those within the expected electron binding energy ranges, however VASP outputs the dielectric function in fortran format 12F6. I think what's happening here is that for K-edge the dielectric function is too small such that the leading decimals are all zero. Dielectric function of material will be vanishingly small as the energy increases which should be obvious as it would be harder to excite core electrons and the deeper the more challenging it is. It should scale as 1/energy^2.
    So, first I want to know your thought on this that do you think there is another issue going on with my calculation ? being said that I have made various changes to my input files for this run including different values for : NBANDS, ENCUT, K-POINT density, different pseudopotentials, ...
      And, if do you think the issue is formating as mentioned above, as there any way we can do to increase the precision of VASP output to 12E6 so that it's in exponential terms?
      Thank you,

      Here is my INCAR:
      ALGO = Normal
      CH_LSPEC = True
      CH_NEDOS = 10000
      CH_SIGMA = 0.05
      CLL = 0
      CLN = 1
      CLNT = 1
      CLZ = 1.0
      EDIFF = 1e-05
      EDIFFG = -0.01
      ENCUT = 400
      ICORELEVEL = 2
      ISMEAR = 0
      ISPIN = 2
      LCHARG = False
      LORBIT = 11
      LREAL = Auto
      LWAVE = False
      NBANDS = 200
      NCORE = 4
      PREC = Accurate
      SIGMA = 0.05
      SYMPREC = 1e-05
      NSIM = 16
      KPAR = 1
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      ferenc_karsai
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      Re: K-edge XAS of Mo

      #2 Post by ferenc_karsai » Mon Feb 26, 2024 8:07 am

      Please try the GW POTCAR of Mo, because it has much more energy channels at higher energies.
      This could possibly provide the missing intensities.
      It's this one:
      Mo_sv_GW
      from the available POTCARs found here:
      wiki/index.php/Available_PAW_potentials

      sahar_bayat
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      Re: K-edge XAS of Mo

      #3 Post by sahar_bayat » Mon Feb 26, 2024 3:35 pm

      [font=]Thank you for your reply. I have also tried GW pseudopotentials, still I do not see any non-zero values; I think the code is working fine just as I get the other edges absorption values but I believe for K-edge of Mo, dielectric function values are so small in this energy range ( which is about 20000eV) that VASP round them up to zero when creating the output files, so I am just not sure how can I modify the output to for example to exponential terms to produce results at higher precision.

      ferenc_karsai
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      Re: K-edge XAS of Mo

      #4 Post by ferenc_karsai » Tue Feb 27, 2024 8:39 am

      Ok there is an undocumented flag that I used for development.
      It's called
      CH_AMPLIFICATION
      . You can set a real value for this and the spectrum is multiplied by this during evaluation before printing.
      So with this precision problems can be circumvented and you can check if there are really peaks beyond numerical noise.

      sahar_bayat
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      Re: K-edge XAS of Mo

      #5 Post by sahar_bayat » Tue Feb 27, 2024 2:13 pm

      so like CH_AMPLIFICATION = 12E6 ? also Could this be used in VASP 6.2.0?
      Thank you

      ferenc_karsai
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      Re: K-edge XAS of Mo

      #6 Post by ferenc_karsai » Wed Feb 28, 2024 8:42 am

      Yes it's available and use it like that.

      sahar_bayat
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      Re: K-edge XAS of Mo

      #7 Post by sahar_bayat » Fri Mar 01, 2024 7:24 pm

      it worked!! Thank you so much!

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