Dear all,
I am trying to execute ab initio molecular dynamics (AIMD) using VASP.
However, there is a problem in setting specific parameters of thermostat.
I have searched various documents regarding 'ANDERSON_PROB' or 'SMASS',
but I didn't get satisfying answer and there weren't exist enough documents.
So, my question is how to decide 'ANDERSON_PROB' or 'SMASS' parameter?
Thank you.
How to select 'ANDERSON_PROB' or 'SMASS' in AIMD?
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Re: How to select 'ANDERSON_PROB' or 'SMASS' in AIMD?
Dear Seunghwan_Kwon,
I guess you want to run a molecular dynamics simulation in the NVT ensemble or maybe the NpT ensemble.
If you want to do a NpT ensemble you have to use the Langevin thermostat:
wiki/index.php/NpT_ensemble
If you want to do a NVT ensemble, you can either use the Andersen, Nose-Hover or the Langevin thermostat within vasp.
So you do not have to set SMASS and ANDERSEN_PROB simultaneously.
To get an overview of the ensembles available in vasp I would like to guide you the ensembles page in the wiki:
wiki/index.php/Category:Ensembles
After you have chosen an ensemble you can check which thermostats are available and how to activate them in this wiki page
wiki/index.php/NVT_ensemble
I hope this resolves your problem, otherwise contact us again
All the best Jonathan
I guess you want to run a molecular dynamics simulation in the NVT ensemble or maybe the NpT ensemble.
If you want to do a NpT ensemble you have to use the Langevin thermostat:
wiki/index.php/NpT_ensemble
If you want to do a NVT ensemble, you can either use the Andersen, Nose-Hover or the Langevin thermostat within vasp.
So you do not have to set SMASS and ANDERSEN_PROB simultaneously.
To get an overview of the ensembles available in vasp I would like to guide you the ensembles page in the wiki:
wiki/index.php/Category:Ensembles
After you have chosen an ensemble you can check which thermostats are available and how to activate them in this wiki page
wiki/index.php/NVT_ensemble
I hope this resolves your problem, otherwise contact us again
All the best Jonathan
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Re: How to select 'ANDERSON_PROB' or 'SMASS' in AIMD?
Thank you for replying.
I wanted to do NVT ensemble,
but the determination of specific parameters that I have to set in order to do NVT simulation such as "SMASS" is quite ambiguous.
Do I have to decide "SMASS" empirically?
I mean, do I have to determine the "SMASS" by changing the number of "SMASS" in a row and compare the temperature fluctuation?
For example, changing "SMASS" 0, 1, 2, 3 sequentially and compare the results and choose the optimized one?
I wanted to do NVT ensemble,
but the determination of specific parameters that I have to set in order to do NVT simulation such as "SMASS" is quite ambiguous.
Do I have to decide "SMASS" empirically?
I mean, do I have to determine the "SMASS" by changing the number of "SMASS" in a row and compare the temperature fluctuation?
For example, changing "SMASS" 0, 1, 2, 3 sequentially and compare the results and choose the optimized one?
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- Global Moderator
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Re: How to select 'ANDERSON_PROB' or 'SMASS' in AIMD?
Dear Seunghwan_Kwon,
Setting the Nose-Hover mass is described on the following wiki page:
wiki/index.php/SMASS
From the wiki: The Nosé-mass should be set such that the induced temperature fluctuation show approximately the same frequencies as the typical 'phonon'-frequencies for the specific system.
A low SMASS value leads to rapid fluctuations of the heat bath (temperature) and a high value of SMASS leads to slow fluctuations of the heat bath. If you need more information on the Nose-Hover thermostat I would recommend you to take a look in the book
Daan Frankel Understanding Molecular Simulation.
So if you know the phonon frequencies of your system I would recommend you to set SMASS such that the temperature fluctuates
according to your lowest phonon frequency. You have to adjust SMASS by a trial and error procedure.
I hope this answers your question
All the best Jonathan
Setting the Nose-Hover mass is described on the following wiki page:
wiki/index.php/SMASS
From the wiki: The Nosé-mass should be set such that the induced temperature fluctuation show approximately the same frequencies as the typical 'phonon'-frequencies for the specific system.
A low SMASS value leads to rapid fluctuations of the heat bath (temperature) and a high value of SMASS leads to slow fluctuations of the heat bath. If you need more information on the Nose-Hover thermostat I would recommend you to take a look in the book
Daan Frankel Understanding Molecular Simulation.
So if you know the phonon frequencies of your system I would recommend you to set SMASS such that the temperature fluctuates
according to your lowest phonon frequency. You have to adjust SMASS by a trial and error procedure.
I hope this answers your question
All the best Jonathan